Statistics about the GENCODE Release M37

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 78258
Protein-coding genes 21529
- readthrough genes (not included) 230
Long non-coding RNA genes 36111
Small non-coding RNA genes 6105
Pseudogenes 13790
- processed pseudogenes 10256
- unprocessed pseudogenes 3145
- unitary pseudogenes 179
- pseudogenes 2
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 493
- pseudogenes 208
Total No of Transcripts 278299
Protein-coding transcripts 58636
- full length protein-coding 45038
- partial length protein-coding 13598
Nonsense mediated decay transcripts 7247
Long non-coding RNA loci transcripts 155932
 
Total No of distinct translations 44964
Genes that have more than one distinct translations 10850

Further details on this version's gene and transcript types

biotype genes transcripts
IG_C_gene 13 22
IG_C_pseudogene 1 1
IG_D_gene 19 19
IG_D_pseudogene 4 4
IG_J_gene 14 14
IG_LV_gene 3 3
IG_pseudogene 1 1
IG_V_gene 218 270
IG_V_pseudogene 158 158
lncRNA 32892 152138
miRNA 2201 2201
misc_RNA 562 566
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 27
nonsense_mediated_decay 0 7247
processed_pseudogene 9316 9316
processed_transcript 0 11
protein_coding 21759 58636
protein_coding_CDS_not_defined 0 14273
protein_coding_LoF 0 106
pseudogene 2 2
retained_intron 0 22064
ribozyme 22 22
rRNA 354 354
scaRNA 51 51
scRNA 1 1
snoRNA 1507 1507
snRNA 1381 1381
sRNA 2 2
TEC 3219 3302
TR_C_gene 8 9
TR_D_gene 4 4
TR_J_gene 70 70
TR_J_pseudogene 10 10
TR_V_gene 144 170
TR_V_pseudogene 34 34
transcribed_processed_pseudogene 940 940
transcribed_unitary_pseudogene 83 86
transcribed_unprocessed_pseudogene 984 992
translated_unprocessed_pseudogene 3 3
unitary_pseudogene 96 96
unprocessed_pseudogene 2158 2162