Statistics about the current GENCODE Release (version M27)

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 55359
Protein-coding genes 21834
Long non-coding RNA genes 13188
Small non-coding RNA genes 6105
Pseudogenes 13737
- processed pseudogenes 10299
- unprocessed pseudogenes 2993
- unitary pseudogenes 87
- polymorphic pseudogenes 89
- pseudogenes 62
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 494
- pseudogenes 207
Total No of Transcripts 142375
Protein-coding transcripts 59135
- full length protein-coding 45373
- partial length protein-coding 13762
Nonsense mediated decay transcripts 7201
Long non-coding RNA loci transcripts 18838
 
Total No of distinct translations 45375
Genes that have more than one distinct translations 10955

Further details on this version's gene and transcript types

biotype genes transcripts
IG_C_gene 13 24
IG_C_pseudogene 1 1
IG_D_gene 19 21
IG_D_pseudogene 4 4
IG_J_gene 14 24
IG_LV_gene 4 53
IG_pseudogene 1 1
IG_V_gene 218 306
IG_V_pseudogene 158 158
lncRNA 9950 15107
miRNA 2201 2201
misc_RNA 562 566
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 25
nonsense_mediated_decay 0 7201
polymorphic_pseudogene 89 101
processed_pseudogene 9999 10001
processed_transcript 0 15092
protein_coding 21834 59135
pseudogene 62 86
retained_intron 0 21922
ribozyme 22 22
rRNA 354 354
scaRNA 51 51
scRNA 1 1
snoRNA 1507 1507
snRNA 1381 1381
sRNA 2 2
TEC 3238 3324
TR_C_gene 8 8
TR_D_gene 4 4
TR_J_gene 70 70
TR_J_pseudogene 10 10
TR_V_gene 144 145
TR_V_pseudogene 34 34
transcribed_processed_pseudogene 300 304
transcribed_unitary_pseudogene 26 30
transcribed_unprocessed_pseudogene 272 285
translated_unprocessed_pseudogene 2 2
unitary_pseudogene 61 61
unprocessed_pseudogene 2719 2727