Statistics about the current GENCODE Release (version M20)

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 54752
Protein-coding genes 21949
Long non-coding RNA genes 13002
Small non-coding RNA genes 6108
Pseudogenes 13197
- processed pseudogenes 9933
- unprocessed pseudogenes 2877
- unitary pseudogenes 40
- polymorphic pseudogenes 80
- pseudogenes 64
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 494
- pseudogenes 203
Total No of Transcripts 138835
Protein-coding transcripts 58004
- full length protein-coding 44569
- partial length protein-coding 13435
Nonsense mediated decay transcripts 6917
Long non-coding RNA loci transcripts 18339
 
Total No of distinct translations 44590
Genes that have more than one distinct translations 10672

Further details on this version's gene and transcript types

biotype genes transcripts
3prime_overlapping_ncRNA 3 4
antisense 2860 4324
bidirectional_promoter_lncRNA 176 303
IG_C_gene 13 21
IG_C_pseudogene 1 1
IG_D_gene 19 19
IG_D_pseudogene 3 3
IG_J_gene 14 14
IG_LV_gene 4 4
IG_pseudogene 2 2
IG_V_gene 218 301
IG_V_pseudogene 155 155
lincRNA 5647 8758
macro_lncRNA 1 2
miRNA 2202 2202
misc_RNA 562 566
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 26
nonsense_mediated_decay 0 6917
polymorphic_pseudogene 80 95
processed_pseudogene 9649 9652
processed_transcript 784 15593
protein_coding 21949 58004
pseudogene 64 90
retained_intron 0 21199
ribozyme 22 22
rRNA 354 354
scaRNA 51 51
scRNA 1 1
sense_intronic 322 357
sense_overlapping 29 55
snoRNA 1507 1507
snRNA 1383 1383
sRNA 2 2
TEC 3180 3258
TR_C_gene 8 10
TR_D_gene 4 4
TR_J_gene 70 70
TR_J_pseudogene 10 10
TR_V_gene 144 194
TR_V_pseudogene 34 34
transcribed_processed_pseudogene 284 293
transcribed_unitary_pseudogene 16 16
transcribed_unprocessed_pseudogene 238 251
translated_processed_pseudogene 0 12
translated_unprocessed_pseudogene 1 1
unitary_pseudogene 24 24
unprocessed_pseudogene 2638 2647