Human

Statistics about the current GENCODE Release (version 38)

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 60649
Protein-coding genes 19955
Long non-coding RNA genes 17944
Small non-coding RNA genes 7567
Pseudogenes 14773
- processed pseudogenes 10667
- unprocessed pseudogenes 3565
- unitary pseudogenes 241
- polymorphic pseudogenes 49
- pseudogenes 15
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 409
- pseudogenes 236
Total No of Transcripts 237012
Protein-coding transcripts 86757
- full length protein-coding 61015
- partial length protein-coding 25742
Nonsense mediated decay transcripts 18881
Long non-coding RNA loci transcripts 48752
 
Total No of distinct translations 63968
Genes that have more than one distinct translations 13689

Further details on this version's gene and transcript types

biotype genes transcripts
IG_C_gene 14 23
IG_C_pseudogene 9 9
IG_D_gene 37 37
IG_J_gene 18 18
IG_J_pseudogene 3 3
IG_pseudogene 1 1
IG_V_gene 145 145
IG_V_pseudogene 187 187
lncRNA 16888 47055
miRNA 1879 1879
misc_RNA 2212 2212
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 99
nonsense_mediated_decay 0 18881
polymorphic_pseudogene 49 70
processed_pseudogene 10163 10165
processed_transcript 0 28999
protein_coding 19955 86757
pseudogene 15 15
retained_intron 0 31290
ribozyme 8 8
rRNA 47 47
rRNA_pseudogene 497 497
scaRNA 49 49
scRNA 1 1
snoRNA 943 943
snRNA 1901 1901
sRNA 5 5
TEC 1056 1147
TR_C_gene 6 6
TR_D_gene 4 4
TR_J_gene 79 79
TR_J_pseudogene 4 4
TR_V_gene 106 106
TR_V_pseudogene 33 33
transcribed_processed_pseudogene 502 502
transcribed_unitary_pseudogene 143 145
transcribed_unprocessed_pseudogene 950 950
translated_processed_pseudogene 2 2
translated_unprocessed_pseudogene 1 1
unitary_pseudogene 98 97
unprocessed_pseudogene 2614 2615
vault_RNA 1 1