Human

Statistics about the current GENCODE Release (version 42)

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 62696
Protein-coding genes 19379
- readthrough genes (not included) 651
Long non-coding RNA genes 19933
Small non-coding RNA genes 7566
Pseudogenes 14737
- processed pseudogenes 10663
- unprocessed pseudogenes 3571
- unitary pseudogenes 252
- pseudogenes 15
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 410
- pseudogenes 236
Total No of Transcripts 252416
Protein-coding transcripts 89305
- full length protein-coding 63972
- partial length protein-coding 25333
Nonsense mediated decay transcripts 21234
Long non-coding RNA loci transcripts 57936
 
Total No of distinct translations 65447
Genes that have more than one distinct translations 13618

Further details on this version's gene and transcript types

biotype genes transcripts
artifact 19 19
IG_C_gene 14 23
IG_C_pseudogene 9 9
IG_D_gene 37 37
IG_J_gene 18 18
IG_J_pseudogene 3 3
IG_pseudogene 1 1
IG_V_gene 145 145
IG_V_pseudogene 187 187
lncRNA 18879 56049
miRNA 1879 1879
misc_RNA 2212 2212
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 105
nonsense_mediated_decay 0 21234
processed_pseudogene 10149 10150
processed_transcript 0 1348
protein_coding 20030 89305
protein_coding_CDS_not_defined 0 26468
protein_coding_LoF 0 73
pseudogene 15 15
retained_intron 0 33947
ribozyme 8 8
rRNA 47 47
rRNA_pseudogene 497 497
scaRNA 49 49
scRNA 1 1
snoRNA 942 942
snRNA 1901 1901
sRNA 5 5
TEC 1054 1143
TR_C_gene 6 6
TR_D_gene 4 4
TR_J_gene 79 79
TR_J_pseudogene 4 4
TR_V_gene 107 107
TR_V_pseudogene 33 33
transcribed_processed_pseudogene 512 512
transcribed_unitary_pseudogene 153 154
transcribed_unprocessed_pseudogene 961 961
translated_processed_pseudogene 2 2
translated_unprocessed_pseudogene 3 3
unitary_pseudogene 99 98
unprocessed_pseudogene 2607 2608
vault_RNA 1 1