Human

Statistics about the current GENCODE Release (version 30)

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 58870
Protein-coding genes 19986
Long non-coding RNA genes 16193
Small non-coding RNA genes 7576
Pseudogenes 14706
- processed pseudogenes 10663
- unprocessed pseudogenes 3525
- unitary pseudogenes 221
- polymorphic pseudogenes 42
- pseudogenes 18
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 408
- pseudogenes 237
Total No of Transcripts 208621
Protein-coding transcripts 83688
- full length protein-coding 57687
- partial length protein-coding 26001
Nonsense mediated decay transcripts 15550
Long non-coding RNA loci transcripts 30369
 
Total No of distinct translations 61870
Genes that have more than one distinct translations 13709

Further details on this version's gene and transcript types

biotype genes transcripts
3prime_overlapping_ncRNA 33 41
antisense 5611 11636
bidirectional_promoter_lncRNA 91 329
IG_C_gene 14 23
IG_C_pseudogene 9 9
IG_D_gene 37 37
IG_J_gene 18 18
IG_J_pseudogene 3 3
IG_pseudogene 1 1
IG_V_gene 144 144
IG_V_pseudogene 188 188
lincRNA 7696 14933
macro_lncRNA 1 1
miRNA 1881 1881
misc_RNA 2212 2227
Mt_rRNA 2 2
Mt_tRNA 22 22
non_coding 1 1
non_stop_decay 0 90
nonsense_mediated_decay 0 15550
polymorphic_pseudogene 42 63
processed_pseudogene 10169 10171
processed_transcript 627 28809
protein_coding 19986 83688
pseudogene 18 38
retained_intron 0 28273
ribozyme 8 8
rRNA 52 52
rRNA_pseudogene 500 500
scaRNA 49 49
scRNA 1 1
sense_intronic 890 950
sense_overlapping 179 368
snoRNA 942 954
snRNA 1901 1901
sRNA 5 5
TEC 1064 1158
TR_C_gene 6 6
TR_D_gene 4 4
TR_J_gene 79 79
TR_J_pseudogene 4 4
TR_V_gene 106 106
TR_V_pseudogene 33 33
transcribed_processed_pseudogene 492 494
transcribed_unitary_pseudogene 125 131
transcribed_unprocessed_pseudogene 900 914
translated_processed_pseudogene 2 2
unitary_pseudogene 96 96
unprocessed_pseudogene 2625 2626
vaultRNA 1 2