Human

Statistics about the current GENCODE Release (version 29)

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 58721
Protein-coding genes 19940
Long non-coding RNA genes 16066
Small non-coding RNA genes 7577
Pseudogenes 14729
- processed pseudogenes 10679
- unprocessed pseudogenes 3535
- unitary pseudogenes 219
- polymorphic pseudogenes 41
- pseudogenes 18
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 408
- pseudogenes 237
Total No of Transcripts 206694
Protein-coding transcripts 83129
Nonsense mediated decay transcripts 15291
Long non-coding RNA loci transcripts 29566
 
Total No of distinct translations 61576
Genes that have more than one distinct translations 13673

Further details on this version's gene and transcript types

biotype genes transcripts
3prime_overlapping_ncRNA 32 40
antisense 5587 11443
bidirectional_promoter_lncRNA 73 298
IG_C_gene 14 23
IG_C_pseudogene 9 9
IG_D_gene 37 37
IG_J_gene 18 18
IG_J_pseudogene 3 3
IG_pseudogene 1 1
IG_V_gene 144 144
IG_V_pseudogene 188 188
lincRNA 7635 14379
macro_lncRNA 1 1
miRNA 1881 1881
misc_RNA 2213 2227
Mt_rRNA 2 2
Mt_tRNA 22 22
non_coding 2 3
non_stop_decay 0 90
nonsense_mediated_decay 0 15291
polymorphic_pseudogene 41 63
processed_pseudogene 10196 10198
processed_transcript 601 28629
protein_coding 19940 83129
pseudogene 18 38
retained_intron 0 28102
ribozyme 8 8
rRNA 52 52
rRNA_pseudogene 500 500
scaRNA 49 49
scRNA 1 1
sense_intronic 895 957
sense_overlapping 180 364
snoRNA 943 955
snRNA 1900 1900
sRNA 5 5
TEC 1060 1155
TR_C_gene 6 6
TR_D_gene 4 4
TR_J_gene 79 79
TR_J_pseudogene 4 4
TR_V_gene 106 106
TR_V_pseudogene 33 33
transcribed_processed_pseudogene 481 481
transcribed_unitary_pseudogene 124 129
transcribed_unprocessed_pseudogene 886 899
translated_processed_pseudogene 2 2
unitary_pseudogene 95 95
unprocessed_pseudogene 2649 2650
vaultRNA 1 1