Statistics about the GENCODE Release M35

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 57132
Protein-coding genes 21423
- readthrough genes (not included) 229
Long non-coding RNA genes 15126
Small non-coding RNA genes 6105
Pseudogenes 13756
- processed pseudogenes 10308
- unprocessed pseudogenes 3132
- unitary pseudogenes 106
- pseudogenes 2
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 493
- pseudogenes 208
Total No of Transcripts 149138
Protein-coding transcripts 58457
- full length protein-coding 44851
- partial length protein-coding 13606
Nonsense mediated decay transcripts 7243
Long non-coding RNA loci transcripts 27096
 
Total No of distinct translations 44819
Genes that have more than one distinct translations 10833

Further details on this version's gene and transcript types

biotype genes transcripts
IG_C_gene 13 22
IG_C_pseudogene 1 1
IG_D_gene 19 19
IG_D_pseudogene 4 4
IG_J_gene 14 14
IG_LV_gene 3 3
IG_pseudogene 1 1
IG_V_gene 218 270
IG_V_pseudogene 158 158
lncRNA 11894 23286
miRNA 2201 2201
misc_RNA 562 566
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 27
nonsense_mediated_decay 0 7243
processed_pseudogene 10001 10001
processed_transcript 0 11
protein_coding 21652 58457
protein_coding_CDS_not_defined 0 14178
protein_coding_LoF 0 106
pseudogene 2 2
retained_intron 0 22051
ribozyme 22 22
rRNA 354 354
scaRNA 51 51
scRNA 1 1
snoRNA 1507 1507
snRNA 1381 1381
sRNA 2 2
TEC 3232 3317
TR_C_gene 8 9
TR_D_gene 4 4
TR_J_gene 70 70
TR_J_pseudogene 10 10
TR_V_gene 144 170
TR_V_pseudogene 34 34
transcribed_processed_pseudogene 307 307
transcribed_unitary_pseudogene 33 36
transcribed_unprocessed_pseudogene 288 296
translated_unprocessed_pseudogene 3 3
unitary_pseudogene 73 73
unprocessed_pseudogene 2841 2846