Statistics about the GENCODE Release M30

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 56691
Protein-coding genes 21668
- readthrough genes (not included) 251
Long non-coding RNA genes 14525
Small non-coding RNA genes 6105
Pseudogenes 13647
- processed pseudogenes 10298
- unprocessed pseudogenes 2992
- unitary pseudogenes 88
- pseudogenes 62
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 494
- pseudogenes 207
Total No of Transcripts 149419
Protein-coding transcripts 59116
- full length protein-coding 45378
- partial length protein-coding 13738
Nonsense mediated decay transcripts 7209
Long non-coding RNA loci transcripts 25419
 
Total No of distinct translations 45344
Genes that have more than one distinct translations 10948

Further details on this version's gene and transcript types

biotype genes transcripts
IG_C_gene 13 22
IG_C_pseudogene 1 1
IG_D_gene 19 19
IG_D_pseudogene 4 4
IG_J_gene 14 14
IG_LV_gene 4 4
IG_pseudogene 1 1
IG_V_gene 218 306
IG_V_pseudogene 158 158
lncRNA 11288 21618
miRNA 2201 2201
misc_RNA 562 566
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 26
nonsense_mediated_decay 0 7209
processed_pseudogene 9998 10000
processed_transcript 0 15557
protein_coding 21919 59116
protein_coding_LoF 0 104
pseudogene 62 83
retained_intron 0 22013
ribozyme 22 22
rRNA 354 354
scaRNA 51 51
scRNA 1 1
snoRNA 1507 1507
snRNA 1381 1381
sRNA 2 2
TEC 3237 3323
TR_C_gene 8 11
TR_D_gene 4 4
TR_J_gene 70 70
TR_J_pseudogene 10 10
TR_V_gene 144 194
TR_V_pseudogene 34 34
transcribed_processed_pseudogene 300 304
transcribed_unitary_pseudogene 27 31
transcribed_unprocessed_pseudogene 272 285
translated_unprocessed_pseudogene 2 2
unitary_pseudogene 61 61
unprocessed_pseudogene 2718 2726