Statistics about the GENCODE Release M23

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 55335
Protein-coding genes 21849
Long non-coding RNA genes 13201
Small non-coding RNA genes 6108
Pseudogenes 13681
- processed pseudogenes 10298
- unprocessed pseudogenes 2955
- unitary pseudogenes 74
- polymorphic pseudogenes 88
- pseudogenes 60
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 494
- pseudogenes 206
Total No of Transcripts 142351
Protein-coding transcripts 59188
- full length protein-coding 45391
- partial length protein-coding 13797
Nonsense mediated decay transcripts 7200
Long non-coding RNA loci transcripts 18800
 
Total No of distinct translations 45400
Genes that have more than one distinct translations 10990

Further details on this version's gene and transcript types

biotype genes transcripts
IG_C_gene 13 21
IG_C_pseudogene 1 1
IG_D_gene 19 19
IG_D_pseudogene 3 3
IG_J_gene 14 14
IG_LV_gene 4 4
IG_pseudogene 2 2
IG_V_gene 218 301
IG_V_pseudogene 158 158
lncRNA 9963 30196
miRNA 2202 2202
misc_RNA 562 566
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 25
nonsense_mediated_decay 0 7200
polymorphic_pseudogene 88 102
processed_pseudogene 9997 10000
protein_coding 21849 59188
pseudogene 60 86
retained_intron 0 21903
ribozyme 22 22
rRNA 354 354
scaRNA 51 51
scRNA 1 1
snoRNA 1507 1507
snRNA 1383 1383
sRNA 2 2
TEC 3238 3324
TR_C_gene 8 10
TR_D_gene 4 4
TR_J_gene 70 70
TR_J_pseudogene 10 10
TR_V_gene 144 194
TR_V_pseudogene 34 34
transcribed_processed_pseudogene 301 305
transcribed_unitary_pseudogene 23 25
transcribed_unprocessed_pseudogene 268 281
translated_processed_pseudogene 0 12
translated_unprocessed_pseudogene 1 1
unitary_pseudogene 51 51
unprocessed_pseudogene 2686 2695