Human
Statistics about the GENCODE Release 9
The statistics derive from the gtf file that contains only the annotation of the main chromosomes.
For details about the calculation of these statistics please see the README_stats.txt file.
General stats
| Total No of Genes |
51838 |
| Protein-coding genes |
20012 |
| Long non-coding RNA genes |
11004 |
| Small non-coding RNA genes |
8801 |
| Pseudogenes |
11651 |
| - processed pseudogenes |
8619 |
| - unprocessed pseudogenes |
1891 |
| - unitary pseudogenes |
103 |
| - polymorphic pseudogenes |
27 |
| - pseudogenes |
819 |
| Immunoglobulin/T-cell receptor gene segments |
|
| - protein coding segments |
370 |
| - pseudogenes |
192 |
| Total No of Transcripts |
169419 |
| Protein-coding transcripts |
77808 |
| - full length protein-coding |
59522 |
| - partial length protein-coding |
18286 |
| Nonsense mediated decay transcripts |
9261 |
| Long non-coding RNA loci transcripts |
18878 |
| |
| Total No of distinct translations |
61094 |
| Genes that have more than one distinct translations |
13497 |
Further details on this version's gene and transcript types
| biotype |
genes |
transcripts |
| 3prime_overlapping_ncrna |
0 |
9 |
| all IG_genes |
191 |
194 |
| all other pseudogenes |
11651 |
13084 |
| all RNA pseudogenes |
1838 |
1838 |
| all RNA_genes |
10679 |
11766 |
| ambiguous_orf |
0 |
56 |
| antisense |
0 |
5179 |
| disrupted_domain |
0 |
1 |
| IG_C_gene |
14 |
16 |
| IG_C_pseudogene |
7 |
7 |
| IG_D_gene |
27 |
27 |
| IG_J_gene |
18 |
18 |
| IG_J_pseudogene |
3 |
3 |
| IG_V_gene |
132 |
133 |
| IG_V_pseudogene |
151 |
151 |
| lincRNA |
5472 |
6559 |
| miRNA |
1756 |
1756 |
| miRNA_pseudogene |
15 |
15 |
| misc_RNA |
1187 |
1187 |
| misc_RNA_pseudogene |
3 |
3 |
| Mt_rRNA |
2 |
2 |
| Mt_tRNA |
22 |
22 |
| Mt_tRNA_pseudogene |
580 |
580 |
| ncrna_host |
0 |
71 |
| non_coding |
0 |
199 |
| nonsense_mediated_decay |
0 |
9261 |
| polymorphic_pseudogene |
27 |
41 |
| processed_pseudogene |
0 |
8832 |
| processed_transcript |
5532 |
29244 |
| protein_coding |
20012 |
77808 |
| pseudogene |
11432 |
917 |
| retained_intron |
0 |
18305 |
| retrotransposed |
0 |
213 |
| rRNA |
531 |
531 |
| rRNA_pseudogene |
179 |
179 |
| scRNA_pseudogene |
787 |
787 |
| sense_intronic |
0 |
406 |
| sense_overlapping |
0 |
19 |
| snoRNA |
1521 |
1521 |
| snoRNA_pseudogene |
73 |
73 |
| snRNA |
1944 |
1944 |
| snRNA_pseudogene |
73 |
73 |
| TEC |
0 |
44 |
| TR_C_gene |
5 |
5 |
| TR_D_gene |
3 |
3 |
| TR_J_gene |
74 |
74 |
| TR_J_pseudogene |
4 |
4 |
| TR_V_gene |
97 |
97 |
| TR_V_pseudogene |
27 |
27 |
| transcribed_processed_pseudogene |
0 |
205 |
| transcribed_unprocessed_pseudogene |
0 |
342 |
| tRNA_pseudogene |
128 |
128 |
| unitary_pseudogene |
0 |
157 |
| unprocessed_pseudogene |
0 |
2185 |
