Human

Statistics about the GENCODE Release 46

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 63086
Protein-coding genes 19411
- readthrough genes (not included) 654
Long non-coding RNA genes 20310
Small non-coding RNA genes 7565
Pseudogenes 14716
- processed pseudogenes 10657
- unprocessed pseudogenes 3564
- unitary pseudogenes 258
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 411
- pseudogenes 237
Total No of Transcripts 254070
Protein-coding transcripts 89581
- full length protein-coding 64695
- partial length protein-coding 24886
Nonsense mediated decay transcripts 21774
Long non-coding RNA loci transcripts 59927
 
Total No of distinct translations 65650
Genes that have more than one distinct translations 13620

Further details on this version's gene and transcript types

biotype genes transcripts
artifact 19 19
IG_C_gene 14 23
IG_C_pseudogene 9 9
IG_D_gene 37 37
IG_J_gene 18 18
IG_J_pseudogene 3 3
IG_pseudogene 1 1
IG_V_gene 145 145
IG_V_pseudogene 187 187
lncRNA 19258 57967
miRNA 1879 1879
misc_RNA 2208 2208
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 105
nonsense_mediated_decay 0 21774
processed_pseudogene 10142 10143
processed_transcript 0 10
protein_coding 20065 89581
protein_coding_CDS_not_defined 0 26505
protein_coding_LoF 0 74
retained_intron 0 34192
ribozyme 8 8
rRNA 47 47
rRNA_pseudogene 497 497
scaRNA 49 49
scRNA 1 1
snoRNA 942 942
snRNA 1901 1901
sRNA 5 5
TEC 1052 1139
TR_C_gene 6 6
TR_D_gene 5 5
TR_J_gene 79 79
TR_J_pseudogene 4 4
TR_V_gene 107 107
TR_V_pseudogene 33 33
transcribed_processed_pseudogene 513 513
transcribed_unitary_pseudogene 158 158
transcribed_unprocessed_pseudogene 962 963
translated_processed_pseudogene 2 2
unitary_pseudogene 100 100
unprocessed_pseudogene 2602 2603
vault_RNA 4 4