Human

Statistics about the GENCODE Release 33

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Total No of Genes 60662
Protein-coding genes 19957
Long non-coding RNA genes 17952
Small non-coding RNA genes 7576
Pseudogenes 14768
- processed pseudogenes 10672
- unprocessed pseudogenes 3554
- unitary pseudogenes 232
- polymorphic pseudogenes 55
- pseudogenes 18
Immunoglobulin/T-cell receptor gene segments
- protein coding segments 408
- pseudogenes 237
Total No of Transcripts 227912
Protein-coding transcripts 84107
- full length protein-coding 58048
- partial length protein-coding 26059
Nonsense mediated decay transcripts 15937
Long non-coding RNA loci transcripts 48438
 
Total No of distinct translations 62357
Genes that have more than one distinct translations 13739

Further details on this version's gene and transcript types

biotype genes transcripts
IG_C_gene 14 23
IG_C_pseudogene 9 9
IG_D_gene 37 37
IG_J_gene 18 18
IG_J_pseudogene 3 3
IG_pseudogene 1 1
IG_V_gene 144 144
IG_V_pseudogene 188 188
lncRNA 16892 46717
miRNA 1881 1881
misc_RNA 2212 2227
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 91
nonsense_mediated_decay 0 15937
polymorphic_pseudogene 55 76
processed_pseudogene 10173 10178
processed_transcript 0 28554
protein_coding 19957 84107
pseudogene 18 38
retained_intron 0 28493
ribozyme 8 8
rRNA 52 52
rRNA_pseudogene 500 500
scaRNA 49 49
scRNA 1 1
snoRNA 942 954
snRNA 1901 1901
sRNA 5 5
TEC 1060 1154
TR_C_gene 6 6
TR_D_gene 4 4
TR_J_gene 79 79
TR_J_pseudogene 4 4
TR_V_gene 106 106
TR_V_pseudogene 33 33
transcribed_processed_pseudogene 497 497
transcribed_unitary_pseudogene 135 143
transcribed_unprocessed_pseudogene 924 939
translated_processed_pseudogene 2 2
translated_unprocessed_pseudogene 1 1
unitary_pseudogene 97 97
unprocessed_pseudogene 2629 2630
vaultRNA 1 1