Human

Statistics about the GENCODE Release 12

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Further details on this version's gene and transcript types

biotype	genes	transcripts
3prime_overlapping_ncrna	32	38
ambiguous_orf	0	61
antisense	3981	5993
disrupted_domain	0	1
IG_C_gene	14	18
IG_C_pseudogene	6	6
IG_D_gene	27	27
IG_J_gene	18	18
IG_J_pseudogene	3	3
IG_V_gene	126	130
IG_V_pseudogene	152	155
lincRNA	5749	7286
miRNA	1756	1756
miRNA_pseudogene	15	15
misc_RNA	1187	1187
misc_RNA_pseudogene	3	3
Mt_rRNA	2	2
Mt_tRNA	22	22
Mt_tRNA_pseudogene	580	580
ncrna_host	21	81
non_coding	105	217
non_stop_decay	0	8
nonsense_mediated_decay	0	10891
polymorphic_pseudogene	29	44
processed_pseudogene	0	9753
processed_transcript	1267	31271
protein_coding	20110	81885
pseudogene	12648	399
retained_intron	0	21423
retrotransposed	0	210
rRNA	531	531
rRNA_pseudogene	179	179
scRNA_pseudogene	787	787
sense_intronic	486	528
sense_overlapping	149	178
snoRNA	1521	1521
snoRNA_pseudogene	73	73
snRNA	1944	1944
snRNA_pseudogene	73	73
TEC	0	86
TR_C_gene	5	5
TR_D_gene	3	3
TR_J_gene	74	74
TR_J_pseudogene	4	4
TR_V_gene	97	97
TR_V_pseudogene	27	27
transcribed_processed_pseudogene	0	239
transcribed_unprocessed_pseudogene	0	573
tRNA_pseudogene	128	128
unitary_pseudogene	0	176
unprocessed_pseudogene	0	2377