Human

Statistics about the GENCODE Release 11

The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

General stats

Further details on this version's gene and transcript types

biotype	genes	transcripts
3prime_overlapping_ncrna	26	32
ambiguous_orf	0	59
antisense	3895	5885
disrupted_domain	0	1
IG_C_gene	14	16
IG_C_pseudogene	7	7
IG_D_gene	27	27
IG_J_gene	18	18
IG_J_pseudogene	3	3
IG_V_gene	132	133
IG_V_pseudogene	151	151
lincRNA	4888	7130
miRNA	1756	1756
miRNA_pseudogene	15	15
misc_RNA	1187	1187
misc_RNA_pseudogene	3	3
Mt_rRNA	2	2
Mt_tRNA	22	22
Mt_tRNA_pseudogene	580	580
ncrna_host	19	80
non_coding	101	212
non_stop_decay	0	8
nonsense_mediated_decay	0	10525
polymorphic_pseudogene	27	42
processed_pseudogene	0	9464
processed_transcript	2078	30891
protein_coding	20107	81040
pseudogene	12542	649
retained_intron	0	20641
retrotransposed	0	211
rRNA	531	531
rRNA_pseudogene	179	179
scRNA_pseudogene	787	787
sense_intronic	457	498
sense_overlapping	136	162
snoRNA	1521	1521
snoRNA_pseudogene	73	73
snRNA	1944	1944
snRNA_pseudogene	73	73
TEC	0	87
TR_C_gene	5	5
TR_D_gene	3	3
TR_J_gene	74	74
TR_J_pseudogene	4	4
TR_V_gene	97	97
TR_V_pseudogene	27	27
transcribed_processed_pseudogene	0	220
transcribed_unprocessed_pseudogene	0	546
tRNA_pseudogene	128	128
unitary_pseudogene	0	176
unprocessed_pseudogene	0	2347