Human

Release 3c (NCBI36/GRCh37)

GTF files (GRCh37)

Content Regions Description Download
Comprehensive gene annotation CHR
  • It contains the comprehensive gene annotation on the reference chromosomes only
  • This is the main annotation file for most users
 GTF
PolyA feature annotation CHR
  • It contains the polyA features (polyA_signal, polyA_site, pseudo_polyA) manually annotated by HAVANA on the reference chromosomes
  • This dataset does not form part of the main annotation file
 GTF
Consensus pseudogenes predicted by the Yale and UCSC pipelines CHR
  • 2-way consensus (retrotransposed) pseudogenes predicted by the Yale and UCSC pipelines, but not by HAVANA, on the reference chromosomes
  • This dataset does not form part of the main annotation file
 GTF
Predicted tRNA genes CHR
  • tRNA genes predicted by ENSEMBL on the reference chromosomes using tRNAscan-SE
  • This dataset does not form part of the main annotation file
 GTF

Fasta files (GRCh37)

Content Regions Description Download
Protein-coding transcript sequences CHR
  • Nucleotide sequences of coding transcripts on the reference chromosomes
  • Transcript biotypes: protein_coding, nonsense_mediated_decay, non_stop_decay, IG_*_gene, TR_*_gene, polymorphic_pseudogene
 Fasta
Protein-coding transcript translation sequences CHR
  • Amino acid sequences of coding transcript translations on the reference chromosomes
  • Transcript biotypes: protein_coding, nonsense_mediated_decay, non_stop_decay, IG_*_gene, TR_*_gene, polymorphic_pseudogene
 Fasta

GTF files (NCBI36)

Content Regions Description Download
Comprehensive gene annotation CHR
  • It contains the comprehensive gene annotation on the reference chromosomes only
  • This is the main annotation file for most users
 GTF
PolyA feature annotation CHR
  • It contains the polyA features (polyA_signal, polyA_site, pseudo_polyA) manually annotated by HAVANA on the reference chromosomes
  • This dataset does not form part of the main annotation file
 GTF
Predicted tRNA genes CHR
  • tRNA genes predicted by ENSEMBL on the reference chromosomes using tRNAscan-SE
  • This dataset does not form part of the main annotation file
 GTF