GENCODE

Statistics about the current Human GENCODE Release (version 28)

* The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

Compare with the previous release (GENCODE 27) »

Version 28 (November 2017 freeze, GRCh38) - Ensembl 92

General stats

Total No of Genes
58381
Protein-coding genes
19901
Long non-coding RNA genes
15779
Small non-coding RNA genes
7569
Pseudogenes
14723
   - processed pseudogenes:
10693
   - unprocessed pseudogenes:
3519
   - unitary pseudogenes:
218
   - polymorphic pseudogenes:
38
   - pseudogenes:
18
Immunoglobulin/T-cell receptor gene segments
   - protein coding segments:
408
   - pseudogenes:
237
 
 
Total No of Transcripts
203835
Protein-coding transcripts
82335
   - full length protein-coding:
56541
   - partial length protein-coding:
25794
Nonsense mediated decay transcripts
14889
Long non-coding RNA loci transcripts
28468




Total No of distinct translations
61132
Genes that have more than one distinct translations
13641


Further details on this version's gene and transcript types

biotype genes transcripts
3prime_overlapping_ncRNA 32 40
antisense 5501 11161
bidirectional_promoter_lncRNA 47 243
IG_C_gene 14 23
IG_C_pseudogene 9 9
IG_D_gene 37 37
IG_J_gene 18 18
IG_J_pseudogene 3 3
IG_pseudogene 1 1
IG_V_gene 144 144
IG_V_pseudogene 188 188
lincRNA 7490 13598
macro_lncRNA 1 1
miRNA 1881 1881
misc_RNA 2213 2227
Mt_rRNA 2 2
Mt_tRNA 22 22
non_coding 3 3
non_stop_decay 0 87
nonsense_mediated_decay 0 14889
polymorphic_pseudogene 38 59
processed_pseudogene 10219 10221
processed_transcript 556 28382
protein_coding 19901 82335
pseudogene 18 37
retained_intron 0 27834
ribozyme 8 8
rRNA 544 544
scaRNA 49 49
scRNA 1 1
sense_intronic 899 958
sense_overlapping 183 350
snoRNA 943 955
snRNA 1900 1900
sRNA 5 5
TEC 1067 1163
TR_C_gene 6 6
TR_D_gene 4 4
TR_J_gene 79 79
TR_J_pseudogene 4 4
TR_V_gene 106 106
TR_V_pseudogene 33 33
transcribed_processed_pseudogene 472 472
transcribed_unitary_pseudogene 123 128
transcribed_unprocessed_pseudogene 855 862
translated_processed_pseudogene 2 2
unitary_pseudogene 95 95
unprocessed_pseudogene 2664 2665
vaultRNA 1 1
 
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