GENCODE

Statistics about the current Mouse GENCODE Release (version M17)

* The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

Compare with the previous release (version M16)

Version M17 (Nov 2017 freeze, GRCm38) - Ensembl 92

General stats

Total No of Genes
53715
Protein-coding genes
21981
Long non-coding RNA genes
12533
Small non-coding RNA genes
6109
Pseudogenes
12596
   - processed pseudogenes:
9388
   - unprocessed pseudogenes:
2824
   - unitary pseudogenes:
35
   - polymorphic pseudogenes:
78
   - pseudogenes:
68
Immunoglobulin/T-cell receptor gene segments
   - protein coding segments:
494
   - pseudogenes:
203
 
 
Total No of Transcripts
135181
Protein-coding transcripts
57060
   - full length protein-coding:
43928
   - partial length protein-coding:
13132
Nonsense mediated decay transcripts
6593
Long non-coding RNA loci transcripts
17514




Total No of distinct translations
43960
Genes that have more than one distinct translations
10411


Further details on this version's gene and transcript types

biotype genes transcripts
3prime_overlapping_ncRNA 2 3
antisense 2767 4164
bidirectional_promoter_lncRNA 147 256
IG_C_gene 13 21
IG_C_pseudogene 1 1
IG_D_gene 19 19
IG_D_pseudogene 3 3
IG_J_gene 14 14
IG_LV_gene 4 4
IG_pseudogene 2 2
IG_V_gene 218 301
IG_V_pseudogene 155 155
lincRNA 5386 8224
macro_lncRNA 1 2
miRNA 2202 2202
misc_RNA 563 566
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 25
nonsense_mediated_decay 0 6593
polymorphic_pseudogene 78 93
processed_pseudogene 9123 9125
processed_transcript 777 15315
protein_coding 21981 57060
pseudogene 68 95
retained_intron 0 20517
ribozyme 22 22
rRNA 354 354
scaRNA 51 51
scRNA 1 1
sense_intronic 313 347
sense_overlapping 28 53
snoRNA 1507 1507
snRNA 1383 1383
sRNA 2 2
TEC 3112 3189
TR_C_gene 8 10
TR_D_gene 4 4
TR_J_gene 70 70
TR_J_pseudogene 10 10
TR_V_gene 144 194
TR_V_pseudogene 34 34
transcribed_processed_pseudogene 265 273
transcribed_unitary_pseudogene 14 14
transcribed_unprocessed_pseudogene 234 247
translated_processed_pseudogene 0 12
unitary_pseudogene 21 21
unprocessed_pseudogene 2590 2599
 
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