GENCODE

The Human GENCODE Reference Release Set


Freeze date * GENCODE release Ensembl release Release date Genome assembly version UCSC version Notes
08.2016 25 85, 86, 87 07.2016 GRCh38 - Latest human gene set
06.2014 21 77, 78 10.2014 GRCh38 - Mapped to GRCh38 with full resolution of errors associated with liftover of annotation from GRCh37 and additional stringent QC of protein-coding gene annotation
07.2013 19 74, 75 12.2013 GRCh37 19 (current for GRCh37) The final build of GENCODE geneset mapped to GRCh37
07.2011 10 65 12.2011 GRCh37 10 Used in ENCODE milestone comparative analysis publications such as Gerstein MB, et al Nature, 2014 PMID: 25164755 , Yue F, et al Nature, 2014 PMID: 25409824 and Pervouchine DD, et al. Nat Commun, 2015 PMID: 25582907
12.2010 7 62 04.2011 GRCh37 7 Used in ENCODE milestone publications such as ENCODE Project Consortium. Nature, 2012 PMID: 22955616 and Djebali S, et al Nature, 2012 PMID: 22955620
07.2009 3c 56 09.2009 NCBI36 / GRCh37 3c (current for NCBI36) The first GENCODE geneset with full merge of manual gene annotation and Ensembl automated annotation

* Month of the Havana data cutoff.

Please also see the FTP site.

 
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