GENCODE

The Human GENCODE Gene Set - Release history


Freeze date * GENCODE release Ensembl release Release date Genome assembly version UCSC version Notes
10.2016 26 88 03.2017 GRCh38 - re-merge with new Havana annotation, updated Ensembl gene set
03.2016 25 85, 86, 87 07.2016 GRCh38 - re-merge with new Havana annotation, updated Ensembl gene set
08.2015 24 83, 84 12.2015 GRCh38 24 (current for GRCh38) re-merge with new Havana annotation, updated Ensembl gene set
03.2015 23 81, 82 07.2015 GRCh38 - re-merge with new Havana annotation, updated Ensembl gene set
10.2014 22 79, 80 03.2015 GRCh38 22 re-merge with new Havana annotation, updated Ensembl gene set
06.2014 21 77, 78 10.2014 GRCh38 - re-merge with new Havana annotation, updated Ensembl gene set
04.2014 20 76 08.2014 GRCh38 20 full new Ensembl gene build & merge with Havana in GRCh38
07.2013 19 74, 75 12.2013 GRCh37 19 (current for GRCh37) re-merge with new Havana annotation, updated Ensembl gene set
04.2013 18 73 09.2013 GRCh37 - re-merge with new Havana annotation, updated Ensembl gene set
02.2013 17 72 06.2013 GRCh37 17 re-merge with new Havana annotation, updated Ensembl gene set
11.2012 16 71 04.2013 GRCh37 - re-merge with new Havana annotation, updated Ensembl gene set
08.2012 15 70 01.2013 GRCh37 - re-merge with new Havana annotation, updated Ensembl gene set
06.2012 14 69 10.2012 GRCh37 14 re-merge with new Havana annotation, updated Ensembl gene set
03.2012 13 68 07.2012 GRCh37 - re-merge with new Havana annotation, updated Ensembl gene set
12.2011 12 67 05.2012 GRCh37 - re-merge with new Havana annotation, updated Ensembl gene set
10.2011 11 66 02.2012 GRCh37 - re-merge with new Havana annotation, updated Ensembl gene set
07.2011 10 65 12.2011 GRCh37 10 re-merge with new Havana annotation, updated Ensembl gene set
05.2011 9 64 09.2011 GRCh37 - re-merge with new Havana annotation, updated Ensembl gene set
03.2011 8 63 06.2011 GRCh37 - re-merge with new Havana annotation, updated Ensembl gene set
12.2010 7 62 04.2011 GRCh37 7 full new Ensembl gene build & merge with Havana
11.2010 6 61 02.2011 GRCh37 - re-merge with new Havana annotation
04.2010 5 60 11.2010 GRCh37 - re-merge with new Havana annotation
01.2010 4 58 05.2010 GRCh37 4 re-merge with new Havana annotation
07.2009 3d 57 03.2010 GRCh37 - re-merge with new Havana annotation, removal of selected Ensembl genes
07.2009 3c 56 09.2009 NCBI36 / GRCh37 3c (current for NCBI36) Automated merge on a gene-by-gene level between Ensembl and Havana, used for ENCODE analysis
03.2009 2b (n.a., contains e54 data) - NCBI36 2 Initial alternative merge procedure: gap-filling Havana annotation with Ensembl data on unfinished Havana chromosomes

* Month of the Havana data cutoff.

Please also see the FTP site.

 
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