GENCODE

Statistics about the current Mouse GENCODE Release (version M13)

* The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

Compare with the previous release (version M12)

Version M13 (October 2016 freeze, GRCm38) - Ensembl 88

General stats

Total No of Genes
50600
Protein-coding genes
21968
Long non-coding RNA genes
11017
Small non-coding RNA genes
6110
Pseudogenes
11009
   - processed pseudogenes:
7941
   - unprocessed pseudogenes:
2662
   - unitary pseudogenes:
36
   - polymorphic pseudogenes:
76
   - pseudogenes:
91
Immunoglobulin/T-cell receptor gene segments
   - protein coding segments:
494
   - pseudogenes:
203
 
 
Total No of Transcripts
125570
Protein-coding transcripts
54712
   - full length protein-coding:
42487
   - partial length protein-coding:
12225
Nonsense mediated decay transcripts
6000
Long non-coding RNA loci transcripts
15300




Total No of distinct translations
42529
Genes that have more than one distinct translations
9788


Further details on this version's gene and transcript types

biotype genes transcripts
3prime_overlapping_ncRNA 2 3
antisense 2480 3702
bidirectional_promoter_lncRNA 89 159
IG_C_gene 13 18
IG_C_pseudogene 1 1
IG_D_gene 19 19
IG_D_pseudogene 3 3
IG_J_gene 14 14
IG_LV_gene 4 4
IG_pseudogene 2 2
IG_V_gene 218 301
IG_V_pseudogene 155 155
lincRNA 4549 6904
macro_lncRNA 1 2
miRNA 2202 2202
misc_RNA 563 566
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 21
nonsense_mediated_decay 0 6000
polymorphic_pseudogene 76 89
processed_pseudogene 7733 7734
processed_transcript 757 14407
protein_coding 21968 54712
pseudogene 91 117
retained_intron 0 18550
ribozyme 22 22
rRNA 354 354
scaRNA 51 51
scRNA 1 1
sense_intronic 279 304
sense_overlapping 25 50
snoRNA 1508 1508
snRNA 1383 1383
sRNA 2 2
TEC 2835 2913
TR_C_gene 8 10
TR_D_gene 4 4
TR_J_gene 70 70
TR_J_pseudogene 10 10
TR_V_gene 144 194
TR_V_pseudogene 34 34
transcribed_processed_pseudogene 208 213
transcribed_unitary_pseudogene 8 8
transcribed_unprocessed_pseudogene 207 228
translated_processed_pseudogene 0 12
unitary_pseudogene 28 28
unprocessed_pseudogene 2455 2462
 
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