GENCODE

Statistics about the current Mouse GENCODE Release (version M15)

* The statistics derive from the gtf file that contains only the annotation of the main chromosomes.

For details about the calculation of these statistics please see the README_stats.txt file.

Compare with the previous release (version M14)

Version M15 (May 2017 freeze, GRCm38) - Ensembl 90

General stats

Total No of Genes
52550
Protein-coding genes
21950
Long non-coding RNA genes
11975
Small non-coding RNA genes
6109
Pseudogenes
12020
   - processed pseudogenes:
8861
   - unprocessed pseudogenes:
2776
   - unitary pseudogenes:
30
   - polymorphic pseudogenes:
77
   - pseudogenes:
73
Immunoglobulin/T-cell receptor gene segments
   - protein coding segments:
494
   - pseudogenes:
203
 
 
Total No of Transcripts
131100
Protein-coding transcripts
55819
   - full length protein-coding:
43077
   - partial length protein-coding:
12742
Nonsense mediated decay transcripts
6364
Long non-coding RNA loci transcripts
16679




Total No of distinct translations
43281
Genes that have more than one distinct translations
10116


Further details on this version's gene and transcript types

biotype genes transcripts
3prime_overlapping_ncRNA 2 3
antisense_RNA 2646 3970
bidirectional_promoter_lncRNA 124 213
IG_C_gene 13 21
IG_C_pseudogene 1 1
IG_D_gene 19 19
IG_D_pseudogene 3 3
IG_J_gene 14 14
IG_LV_gene 4 4
IG_pseudogene 2 2
IG_V_gene 218 301
IG_V_pseudogene 155 155
lincRNA 5082 7725
macro_lncRNA 1 2
miRNA 2202 2202
misc_RNA 563 566
Mt_rRNA 2 2
Mt_tRNA 22 22
non_stop_decay 0 23
nonsense_mediated_decay 0 6364
polymorphic_pseudogene 77 92
processed_pseudogene 8615 8616
processed_transcript 769 14979
protein_coding 21950 55819
pseudogene 73 100
retained_intron 0 19660
ribozyme 22 22
rRNA 354 354
scaRNA 51 51
scRNA 1 1
sense_intronic 307 336
sense_overlapping 27 52
snoRNA 1507 1507
snRNA 1383 1383
sRNA 2 2
TEC 3017 3096
TR_C_gene 8 10
TR_D_gene 4 4
TR_J_gene 70 70
TR_J_pseudogene 10 10
TR_V_gene 144 194
TR_V_pseudogene 34 34
transcribed_processed_pseudogene 246 252
transcribed_unitary_pseudogene 12 12
transcribed_unprocessed_pseudogene 228 247
translated_processed_pseudogene 0 12
unitary_pseudogene 18 18
unprocessed_pseudogene 2548 2555
 
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